STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKA24662.1Pfam: Copper resistance protein B precursor (CopB). (309 aa)    
Predicted Functional Partners:
AKA24661.1
Pfam: Multicopper oxidase; TIGRFAM: copper_res_A: copper-resistance protein, CopA family; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.
 
  
 0.985
AKA24663.1
Copper resistance protein C; Pfam: CopC domain.
 
   
 0.832
AKA22781.1
Pfam: Multicopper oxidase.
 
  
 0.827
AKA25518.1
Pfam: Copper binding proteins, plastocyanin/azurin family.
 
  
 0.804
AKA24664.1
Pfam: Copper resistance protein D.
 
     0.798
AKA22211.1
Nitrite reductase; Pfam: Multicopper oxidase; TIGRFAM: Cu_nitrite_red: nitrite reductase, copper-containing; PRINTS: Copper containing nitrite reductase signature; Belongs to the multicopper oxidase family.
  
  
 0.717
AKA24660.1
Hypothetical protein.
       0.572
AKA24665.1
Pfam: Protein of unknown function, DUF.
 
   
 0.535
AKA26826.1
Cation-transporting ATPase transmembrane protein; TIGRFAM: ATPase-IB_hvy: heavy metal translocating P-type ATPase; PRINTS: P-type cation-transporting ATPase superfamily signature; Pfam: Heavy-metal-associated domain; TIGRFAM: ATPase-IB1_Cu: copper-translocating P-type ATPase; Pfam: E1-E2 ATPase; PRINTS: Copper-transporting ATPase signature; Pfam: haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase_P-type: HAD ATPase, P-type, family IC.
     
 0.512
AKA25304.1
Hypothetical protein; Pfam: Domain of unknown function (DUF4349).
  
     0.431
Your Current Organism:
Pseudomonas chlororaphis
NCBI taxonomy Id: 587753
Other names: ATCC 9446, Bacillus chlororaphis, CCUG 552 B, CFBP 2132, CIP 63.22, DSM 50083, HAMBI 2011, IFO 3904, JCM 2778, LMG 5004, LMG:5004, NBRC 3904, NCCB 76041, NCIB 9392, NCIMB 9392, NCTC 13002, P. chlororaphis, Pseudomonas sp. UFB2
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