STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKA24668.1Hypothetical protein; Pfam: Cytochrome c; Pfam: Cytochrome C oxidase, cbb3-type, subunit III. (191 aa)    
Predicted Functional Partners:
AKA24667.1
Pyridine nucleotide-disulfide oxidoreductase; Pfam: Flavocytochrome c sulphide dehydrogenase, flavin-binding; Pfam: Pyridine nucleotide-disulphide oxidoreductase.
 
 
 
 0.969
AKA27437.1
Pfam: Cytochrome c.
 
   
 0.775
AKA24119.1
Pfam: Cytochrome c.
 
   
 0.771
AKA26202.1
Pfam: Pyridine nucleotide-disulphide oxidoreductase.
 
 
 
 0.728
AKA25088.1
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
   
 
 0.690
AKA24669.1
Hypothetical protein.
       0.588
AKA25561.1
Peptidase S41; TIGRFAM: ccoO: cytochrome c oxidase, cbb3-type, subunit II; Pfam: Cytochrome C oxidase, mono-heme subunit/FixO.
  
 
 0.528
ccoO
Peptidase S41; TIGRFAM: ccoO: cytochrome c oxidase, cbb3-type, subunit II; Pfam: Cytochrome C oxidase, mono-heme subunit/FixO.
  
 
 0.528
AKA22643.1
Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
  
 0.490
AKA22644.1
Pfam: Cytochrome C1 family; PRINTS: Cytochrome C1 signature.
 
  
 0.485
Your Current Organism:
Pseudomonas chlororaphis
NCBI taxonomy Id: 587753
Other names: ATCC 9446, Bacillus chlororaphis, CCUG 552 B, CFBP 2132, CIP 63.22, DSM 50083, HAMBI 2011, IFO 3904, JCM 2778, LMG 5004, LMG:5004, NBRC 3904, NCCB 76041, NCIB 9392, NCIMB 9392, NCTC 13002, P. chlororaphis, Pseudomonas sp. UFB2
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.