STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO88103.1Sugar phosphate isomerase/epimerase. (493 aa)    
Predicted Functional Partners:
SFO88001.1
Predicted pyrophosphatase or phosphodiesterase, AlkP superfamily.
 
     0.958
SFO88071.1
Hypothetical protein.
 
  
 0.958
SFO88135.1
4-hydroxybenzoate polyprenyltransferase.
 
     0.958
SFO88170.1
Myo-inositol-1-phosphate synthase.
 
     0.958
SFO88036.1
Xylose isomerase-like TIM barrel.
 
     0.957
SFO88209.1
PKD domain-containing protein.
 
   
 0.905
SFO87959.1
Sugar phosphate isomerase/epimerase.
 
     0.847
SFP97458.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
   
 0.810
SFO84030.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
    
  0.787
SFO84079.1
Tartronate-semialdehyde synthase; Belongs to the TPP enzyme family.
    
  0.785
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.