STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO99827.1Uncharacterized conserved protein. (107 aa)    
Predicted Functional Partners:
SFO99804.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the 'phage' integrase family.
 
     0.899
SFP86371.1
Uncharacterized conserved protein.
  
     0.726
SFQ55037.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.719
SFO86674.1
Uncharacterized conserved protein.
  
     0.653
SFP25939.1
RNA polymerase sigma factor, sigma-70 family.
 
     0.621
SFO99852.1
Protein of unknown function.
       0.534
SFO99879.1
Hypothetical protein.
       0.419
SFP44867.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.403
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.