STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP06035.1Hypothetical protein. (80 aa)    
Predicted Functional Partners:
SFP00745.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
  
 
 0.973
SFQ63549.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
   
  0.777
SFP05949.1
ANTAR domain-containing protein.
       0.773
SFP05982.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
       0.773
SFP06006.1
stearoyl-CoA desaturase (delta-9 desaturase).
       0.773
SFO91520.1
GAF domain-containing protein.
  
 0.715
SFQ03804.1
Stage II sporulation protein E (SpoIIE).
  
 0.715
SFP05856.1
ANTAR domain-containing protein.
       0.686
SFP03447.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
  0.685
SFQ03739.1
Serine/threonine-protein kinase RsbT.
  
  0.685
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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