STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP06864.14-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family. (307 aa)    
Predicted Functional Partners:
SFP06898.1
Thioredoxin reductase.
  
  0.996
SFP06938.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
  
  0.988
SFP06970.1
Glycine/D-amino acid oxidase.
 
  
 0.979
SFP06832.1
Proline racemase; Belongs to the proline racemase family.
 
   
 0.950
dapB
4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
 
 0.924
SFP06759.1
NADP-dependent aldehyde dehydrogenase.
 
 
 0.906
SFP66754.1
Aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
 
 0.902
SFO93766.1
Homoserine dehydrogenase.
  
 
 0.814
SFQ64239.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.812
SFQ59923.1
Sarcosine oxidase subunit beta.
 
  
 0.789
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.