STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO82724.1Phage terminase, small subunit, putative, P27 family. (152 aa)    
Predicted Functional Partners:
SFO82695.1
Phage terminase-like protein, large subunit, contains N-terminal HTH domain.
 
    0.965
SFO82637.1
Phage portal protein, SPP1 Gp6-like.
 
     0.553
SFO82754.1
PadR family transcriptional regulator, regulatory protein PadR.
       0.537
SFO82261.1
Tape measure domain-containing protein.
 
     0.432
SFO96671.1
HNH endonuclease.
  
    0.423
SFP96284.1
5-methylcytosine-specific restriction endonuclease McrA.
  
    0.423
SFQ10499.1
HNH endonuclease.
  
    0.423
SFQ75067.1
HNH endonuclease.
  
    0.423
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.