STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP10922.1Methyltransferase domain-containing protein. (294 aa)    
Predicted Functional Partners:
SFP10880.1
Hypothetical protein.
       0.773
SFP10965.1
Hypothetical protein.
       0.773
SFP37632.1
Polynucleotide kinase-phosphatase.
 
 
   0.766
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
  0.670
SFO98175.1
Magnesium chelatase subunit D.
  
 0.660
SFP43425.1
3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9, 17-dione monooxygenase.
  
     0.490
SFQ63219.1
Hypothetical protein.
  
     0.434
SFP67310.1
Hypothetical protein.
  
     0.432
SFQ49780.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
    0.424
SFP32563.1
RHS repeat-associated core domain-containing protein.
  
     0.411
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.