STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP27871.1tRNA synthetase class II core domain (G, H, P, S and T). (364 aa)    
Predicted Functional Partners:
SFP27818.1
Phosphopantetheine attachment site.
   
 
 0.845
SFQ00002.1
Acyl transferase domain-containing protein.
   
 
 0.838
SFQ69834.1
Acyl transferase domain-containing protein.
   
 
 0.816
SFO88816.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase D.
   
 
 0.812
SFQ54891.1
Conserved hypothetical protein.
    
   0.809
SFP85978.1
Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
 
    0.783
SFQ69084.1
Ketoacyl-synthetase C-terminal extension; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
 
 0.766
trmB
tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
 
 0.729
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.709
SFQ03147.1
Acyl carrier protein.
   
 
 0.709
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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