STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP53624.1Lsr2 protein. (113 aa)    
Predicted Functional Partners:
SFO86365.1
Protein of unknown function.
  
     0.687
SFP34746.1
Protein of unknown function.
  
     0.626
SFQ41090.1
Sugar phosphate isomerase/epimerase.
  
     0.617
SFP26237.1
Cobalamin-independent synthase, Catalytic domain.
  
     0.575
SFP46736.1
Protein of unknown function.
  
     0.525
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
   
 0.518
SFO86557.1
Protein of unknown function.
  
     0.504
lysS
lysyl-tRNA synthetase, class 2; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.477
SFQ63750.1
MaoC like domain-containing protein.
  
   
 0.458
SFP53600.1
TIGR03086 family protein.
       0.456
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
Server load: low (26%) [HD]