STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP85516.1Thioredoxin reductase (NADPH). (332 aa)    
Predicted Functional Partners:
SFP85549.1
Thioredoxin; Belongs to the thioredoxin family.
 0.997
SFP31185.1
Putative thioredoxin.
 
 0.898
SFP87553.1
Cystathionine gamma-synthase.
   
 
 0.837
SFQ51815.1
Methionine-gamma-lyase.
   
 
 0.837
SFO97103.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.833
SFQ35074.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.833
SFQ42711.1
Methionine-gamma-lyase.
   
 
 0.798
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.790
SFQ31884.1
Selenocysteine lyase/Cysteine desulfurase.
   
 
  0.773
SFQ49981.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
   
 
  0.773
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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