STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP86909.1PH domain-containing protein. (139 aa)    
Predicted Functional Partners:
crgA
Uncharacterised protein family (UPF0233); Involved in cell division; Belongs to the CrgA family.
 
   
 0.765
SFQ32126.1
Hypothetical protein.
  
     0.738
SFP36290.1
Hypothetical protein.
  
     0.697
SFQ20881.1
TIGR03089 family protein.
  
     0.684
SFP34085.1
Lipoprotein LpqB beta-propeller domain-containing protein.
  
     0.674
SFP25537.1
PH domain-containing protein.
  
     0.674
SFO85140.1
Protein of unknown function.
  
   
 0.650
SFP38418.1
Hypothetical protein.
  
     0.639
SFQ22661.1
Hypothetical protein.
  
     0.637
SFQ40887.1
Hypothetical protein.
  
     0.628
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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