STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP99744.1F420-dependent oxidoreductase, CPS_4043 family. (333 aa)    
Predicted Functional Partners:
SFP99782.1
Dihydropyrimidinase.
 
     0.944
SFP99808.1
N-carbamoylputrescine amidase.
 
     0.933
SFP99838.1
Nucleobase:cation symporter-1, NCS1 family.
 
     0.829
SFQ69084.1
Ketoacyl-synthetase C-terminal extension; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
 0.676
SFO88561.1
Proline iminopeptidase.
  
  
 0.658
SFQ58113.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
  
  0.655
SFQ34742.1
Probable F420-dependent oxidoreductase, MSMEG_2906 family.
  
     0.654
SFP42850.1
Luciferase-like monooxygenase.
  
     0.616
SFQ44398.1
Luciferase-like monooxygenase.
  
     0.608
SFO92087.1
F420-dependent oxidoreductase, G6PDH family.
  
     0.576
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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