STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ07473.1Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily. (385 aa)    
Predicted Functional Partners:
SFP82199.1
Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily.
   
  0.967
SFP88447.1
Gamma-glutamyltranspeptidase / glutathione hydrolase.
    
 0.790
SFQ50970.1
Gamma-glutamyltranspeptidase / glutathione hydrolase.
    
 0.790
SFP33785.1
1-pyrroline-5-carboxylate dehydrogenase.
   
 
  0.747
SFP71919.1
1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
  0.747
SFP96463.1
Aminopeptidase N.
     
 0.742
SFQ50584.1
Aminopeptidase N.
     
 0.742
SFQ07498.1
Hypothetical protein.
       0.737
SFQ07525.1
Hypothetical protein.
       0.737
SFQ21973.1
Amidohydrolase.
   
  0.605
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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