STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ16604.1Hypothetical protein. (299 aa)    
Predicted Functional Partners:
SFQ16630.1
Hypothetical protein.
       0.586
SFQ51130.1
Helix-turn-helix.
  
 
   0.569
SFP65983.1
Glutaredoxin.
  
     0.567
SFQ18123.1
P-aminobenzoate N-oxygenase AurF.
  
     0.530
SFQ10425.1
P-aminobenzoate N-oxygenase AurF.
  
     0.438
SFQ36508.1
Hypothetical protein.
  
     0.431
SFQ72785.1
Glutaredoxin.
  
     0.429
SFP26314.1
Glyoxylase, beta-lactamase superfamily II.
  
     0.418
SFQ71721.1
Pyridoxamine 5'-phosphate oxidase family protein.
  
     0.407
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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