STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ24630.1Two component transcriptional regulator, LuxR family. (224 aa)    
Predicted Functional Partners:
SFP00745.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
  
 0.968
SFQ24655.1
Signal transduction histidine kinase.
 
 
 0.941
SFP04223.1
Signal transduction histidine kinase.
  
  0.784
SFP04063.1
Signal transduction histidine kinase.
  
  0.757
SFP50452.1
Signal transduction histidine kinase.
 
  0.754
SFQ24682.1
Phage shock protein PspC (stress-responsive transcriptional regulator).
 
  
 0.745
SFQ64775.1
Signal transduction histidine kinase.
  
  0.743
SFP88684.1
Signal transduction histidine kinase.
  
  0.742
SFQ69403.1
Signal transduction histidine kinase.
 
  0.720
SFQ45444.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.707
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.