STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ44295.1decaprenylphospho-beta-D-ribofuranose 2-oxidase. (455 aa)    
Predicted Functional Partners:
SFQ44307.1
decaprenylphospho-beta-D-erythro-pentofuranosid- 2-ulose 2-reductase.
     0.974
SFQ44283.1
Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose).
 
     0.888
SFQ44335.1
Decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
 
  
 0.855
SFP00131.1
Short-chain dehydrogenase.
 
     0.778
SFQ64239.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.724
SFO97103.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.674
SFQ35074.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.674
SFP29275.1
Electron transfer flavoprotein alpha subunit.
  
 
 0.667
SFP29297.1
Electron transfer flavoprotein beta subunit.
  
 
 0.666
SFO89312.1
FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase.
  
 0.664
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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