STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ54703.1Fusaric acid resistance protein-like. (775 aa)    
Predicted Functional Partners:
SFQ54718.1
Hypothetical protein.
       0.773
SFQ54728.1
Alpha-1,2-mannosidase, putative.
       0.773
SFQ50681.1
Hypothetical protein.
  
     0.763
SFQ49966.1
Nitrogen fixation protein NifU.
   
    0.718
SFQ54741.1
Predicted alpha-1,6-mannanase, GH76 family.
       0.705
SFP40981.1
Glycosyl hydrolases family 25.
  
     0.686
pheT
phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.658
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
       0.636
SFO84002.1
HTH domain-containing protein.
  
     0.581
SFP67863.1
Helix-turn-helix domain-containing protein.
  
     0.512
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.