STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ64226.1DNA-binding transcriptional regulator, Lrp family. (149 aa)    
Predicted Functional Partners:
SFQ64239.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.828
SFQ64211.1
N-Dimethylarginine dimethylaminohydrolase.
 
   
 0.811
SFQ51831.1
DNA-binding transcriptional regulator, Lrp family.
  
     0.772
SFQ58427.1
uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
  
 
 0.717
SFQ02822.1
Phenazine biosynthesis protein phzE.
   
 
  0.544
SFQ64253.1
2-oxoglutarate ferredoxin oxidoreductase subunit beta.
    
  0.511
SFP09862.1
DNA-binding transcriptional regulator, HxlR family.
   
    0.476
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.