STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ62713.1Hypothetical protein. (240 aa)    
Predicted Functional Partners:
SFQ62702.1
Type VII secretion protein EccE.
 
     0.958
SFQ62691.1
Type VII secretion protein EccB.
 
     0.777
SFP88242.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.774
SFQ62648.1
Type VII secretion integral membrane protein EccD.
 
     0.773
SFQ73682.1
Bifunctional DNA primase/polymerase, N-terminal.
  
     0.771
SFQ55380.1
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.770
SFP74923.1
Hypothetical protein.
  
     0.768
SFP74858.1
Hypothetical protein.
  
     0.764
SFQ22730.1
Hypothetical protein.
  
     0.762
SFQ71367.1
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.762
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.