STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ68913.1AAA ATPase domain-containing protein. (1077 aa)    
Predicted Functional Partners:
SFP00745.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
 
 0.846
SFP09706.1
Ribosomal protein S12 methylthiotransferase accessory factor.
 
     0.638
SFP09669.1
SagB-type dehydrogenase domain-containing protein.
  
     0.615
SFP07156.1
Hypothetical protein.
    
   0.536
SFQ68929.1
Hypothetical protein.
       0.515
SFP07434.1
PucR C-terminal helix-turn-helix domain-containing protein.
  
     0.513
SFO80498.1
Adenylate cyclase.
     
 0.452
SFP03313.1
Ig-like domain (group 3).
  
     0.439
SFP03335.1
F5/8 type C domain-containing protein.
  
     0.415
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.