STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ69485.1Trypsin. (239 aa)    
Predicted Functional Partners:
SFQ74952.1
Tachylectin.
  
     0.764
SFO91117.1
Trypsin.
  
     0.757
SFO92640.1
Protein of unknown function.
    
 0.702
SFQ01186.1
Serpin B; Belongs to the serpin family.
 
 
 0.648
SFP86736.1
Zinc carboxypeptidase.
  
 
  0.587
SFP48831.1
Zinc carboxypeptidase.
  
 
  0.550
SFQ34438.1
Subtilase family protein; Belongs to the peptidase S8 family.
  
  
  0.546
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.513
SFO91184.1
Short repeat-containing protein of unknown function.
  
     0.512
SFQ26297.1
Type VII secretion-associated protein, Rv3446c family, C-terminal domain-containing protein; Belongs to the heat shock protein 70 family.
  
 
  0.512
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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