STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ73084.1Sulfate permease, SulP family. (494 aa)    
Predicted Functional Partners:
SFO88816.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase D.
   
 
 0.945
SFQ00002.1
Acyl transferase domain-containing protein.
  
 
 0.944
SFQ69834.1
Acyl transferase domain-containing protein.
  
 
 0.941
SFQ36764.1
Ubiquinol-cytochrome c reductase cytochrome b subunit.
    
 
 0.937
sbcD
Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
   0.867
SFP47390.1
Calcineurin-like phosphoesterase.
   
   0.867
SFQ36445.1
Carbonic anhydrase.
 
 
0.856
SFP53309.1
Carbonic anhydrase.
  
 
 0.825
SFO97103.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.805
SFQ35074.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.805
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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