STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ73736.1Pilus assembly protein CpaF. (389 aa)    
Predicted Functional Partners:
SFQ73726.1
Tight adherence protein B.
  
  
 0.955
SFQ73719.1
Type II secretion system (T2SS), protein F.
  
  
 0.954
SFQ73744.1
Helicase/secretion neighborhood CpaE-like protein.
      0.883
SFQ73701.1
Hypothetical protein.
  
  
 0.827
SFQ73711.1
Protein of unknown function.
     
 0.800
SFQ73692.1
Helicase/secretion neighborhood TadE-like protein.
     
 0.753
SFP41890.1
Flp pilus assembly protein CpaB.
  
  
 0.640
topA
DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
      0.441
SFQ65306.1
MinD-like ATPase involved in chromosome partitioning or flagellar assembly.
 
  
 0.421
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.