STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ75235.1N-acetylmuramoyl-L-alanine amidase. (408 aa)    
Predicted Functional Partners:
SFP70840.1
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases-containing protein.
 
     0.896
SFP70807.1
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases-containing protein.
 
    
 0.827
SFP45352.1
Peptidase_C39 like family protein.
 
     0.757
SFQ75224.1
Hypothetical protein.
       0.701
SFQ59757.1
Hypothetical protein.
  
     0.693
SFQ69912.1
Acetyltransferase (GNAT) domain-containing protein.
  
    0.557
SFP68414.1
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases-containing protein.
 
     0.510
SFP30631.1
Ribosomal protection tetracycline resistance protein.
  
    0.464
SFQ23174.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
  
  
 0.425
SFQ59822.1
Multiple sugar transport system substrate-binding protein.
  
     0.416
Your Current Organism:
Yuhushiella deserti
NCBI taxonomy Id: 587909
Other names: CGMCC 4.5579, DSM 45648, JCM 16584, Pseudonocardiaceae bacterium RA45, Y. deserti, Yuhushiella deserti Mao et al. 2011, strain RA45
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