Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
papD_4Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)    
Predicted Functional Partners:
papC_4
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.955
fimD_9
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.829
htrE_2
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.829
fimD_6
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.829
fimD_5
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.829
fimD_7
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.829
fimD_3
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.829
fimD_2
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.829
papC_1
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.829
fimD_1
Outer membrane usher protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.829
Your Current Organism:
Providencia stuartii
NCBI taxonomy Id: 588
Other names: ATCC 29914, CCUG 14805, CDC 2896-68, CIP 104687, DSM 4539, LMG 3260, LMG:3260, NCTC 11800, P. stuartii, Proteus stuartii
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