STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0015Group II intron maturase-specific domain protein; KEGG: nth:Nther_2778 RNA-directed DNA polymerase (reverse transcriptase); manually curated; PFAM: Group II intron maturase-specific domain protein. (148 aa)    
Predicted Functional Partners:
Cpap_0397
Hypothetical protein; Manually curated; KEGG: swo:Swol_1977 hypothetical protein.
  
     0.773
Cpap_1675
Hypothetical protein; Manually curated; KEGG: swo:Swol_1977 hypothetical protein.
  
     0.772
Cpap_3405
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: spc:Sputcn32_2611 retron-type reverse transcriptase.
  
     0.738
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
   
 
 0.601
Cpap_0016
KEGG: cce:Ccel_0501 hypothetical protein.
       0.467
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.