STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0046TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: cce:Ccel_2413 twitching motility protein; SMART: AAA ATPase. (351 aa)    
Predicted Functional Partners:
Cpap_0047
PFAM: Type II secretion system F domain; KEGG: cce:Ccel_2412 type II secretion system protein.
 
  
 0.950
Cpap_0050
KEGG: cce:Ccel_2409 type IV pilus assembly protein PilM; TIGRFAM: type IV pilus assembly protein PilM; PFAM: cell division protein FtsA.
 
   
 0.928
Cpap_0049
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.898
Cpap_0045
KEGG: cce:Ccel_2414 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
 
  
0.864
Cpap_0048
KEGG: cce:Ccel_2411 hypothetical protein.
 
   
 0.726
Cpap_2936
KEGG: cce:Ccel_1955 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
     
 0.614
Cpap_3022
Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cce:Ccel_1885 diguanylate cyclase with GAF sensor; SMART: GGDEF domain containing protein; GAF domain protein.
 
   
 0.604
Cpap_0053
KEGG: cce:Ccel_2406 hypothetical protein.
  
  
 0.594
Cpap_0054
Hypothetical protein; Manually curated; KEGG: cce:Ccel_2405 hypothetical protein.
     
 0.448
Cpap_3935
PFAM: Rubrerythrin; KEGG: cce:Ccel_1168 rubrerythrin.
   
    0.426
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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