STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0054Hypothetical protein; Manually curated; KEGG: cce:Ccel_2405 hypothetical protein. (314 aa)    
Predicted Functional Partners:
Cpap_0053
KEGG: cce:Ccel_2406 hypothetical protein.
     
 0.843
Cpap_0048
KEGG: cce:Ccel_2411 hypothetical protein.
  
  
 0.769
Cpap_0055
KEGG: cce:Ccel_2404 hypothetical protein.
     
 0.669
Cpap_0052
PFAM: Fimbrial assembly family protein; KEGG: cce:Ccel_2407 fimbrial assembly family protein.
  
    0.604
Cpap_0050
KEGG: cce:Ccel_2409 type IV pilus assembly protein PilM; TIGRFAM: type IV pilus assembly protein PilM; PFAM: cell division protein FtsA.
     
 0.601
Cpap_0045
KEGG: cce:Ccel_2414 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
    
 0.599
Cpap_2936
KEGG: cce:Ccel_1955 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
     
 0.568
Cpap_0047
PFAM: Type II secretion system F domain; KEGG: cce:Ccel_2412 type II secretion system protein.
     
 0.560
Cpap_0056
KEGG: cce:Ccel_2403 PA14 domain protein; PFAM: Fibronectin type III domain protein; SMART: PA14 domain protein; Fibronectin type III domain protein.
       0.559
Cpap_0051
KEGG: cce:Ccel_2408 hypothetical protein.
       0.528
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.