STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0069PFAM: AAA-4 family protein; KEGG: dae:Dtox_1535 putative transcriptional regulator. (521 aa)    
Predicted Functional Partners:
Cpap_3404
KEGG: eum:ECUMN_2310 hypothetical protein.
  
    0.725
Cpap_3987
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.655
Cpap_4211
Protein of unknown function DUF450; KEGG: rsd:TGRD_039 type I restriction-modification system restriction subunit; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase.
  
    0.655
Cpap_0070
KEGG: eum:ECUMN_2969 hypothetical protein.
       0.648
Cpap_0068
KEGG: xal:XALc_2608 hypothetical protein.
       0.599
Cpap_2285
PFAM: restriction modification system DNA specificity domain; KEGG: mfe:Mefer_0543 N-6 DNA methylase.
  
    0.587
Cpap_3984
PFAM: restriction modification system DNA specificity domain; KEGG: sbm:Shew185_2194 restriction modification system DNA specificity subunit.
  
    0.587
Cpap_4212
Hypothetical protein; KEGG: kpn:KPN_pKPN4p07085 putative restriction endonuclease S subunit.
  
    0.587
Cpap_0162
DNA-cytosine methyltransferase; KEGG: dsy:DSY0044 hypothetical protein; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
    0.562
Cpap_0071
Hypothetical protein; KEGG: cyn:Cyan7425_3938 TPR repeat-containing protein.
       0.545
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.