STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0108KEGG: cce:Ccel_2128 NLP/P60 protein; PFAM: NLP/P60 protein; SH3 type 3 domain protein; SMART: SH3 domain protein; SH3 domain-containing protein. (235 aa)    
Predicted Functional Partners:
Cpap_1750
KEGG: dae:Dtox_0436 S-layer domain protein; PFAM: SH3 type 3 domain protein; S-layer domain-containing protein; SMART: SH3 domain protein.
 
 
 0.838
engB
Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
   
    0.701
Cpap_0040
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: cce:Ccel_0520 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Belongs to the peptidase S11 family.
    
  0.453
Cpap_1082
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: cce:Ccel_0487 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; Belongs to the peptidase S11 family.
    
  0.453
Cpap_3151
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: cce:Ccel_1749 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; Belongs to the peptidase S11 family.
    
  0.453
Cpap_3289
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: ckr:CKR_0017 hypothetical protein.
    
  0.453
Cpap_3526
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: cce:Ccel_1370 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Belongs to the peptidase S11 family.
    
  0.453
Cpap_4106
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: cce:Ccel_2331 amino acid adenylation domain protein; SMART: Polyketide synthase/Fatty acid synthase, KR.
  
  
 0.414
Cpap_2208
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: bcq:BCQ_4665 D-alanyl-D-alanine carboxypeptidase.
    
 0.402
Cpap_3191
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: cdl:CDR20291_1525 putative D-alanyl-D-alanine carboxypeptidase.
    
 0.402
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.