STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0135Transposase; KEGG: swo:Swol_2281 transposase. (522 aa)    
Predicted Functional Partners:
Cpap_0134
KEGG: cth:Cthe_0516 IS66 Orf2 like; manually curated; PFAM: IS66 Orf2 family protein.
 
     0.887
Cpap_1839
PFAM: IS66 Orf2 family protein; KEGG: clj:CLJU_c05390 putative IS66 like transposase.
     0.781
Cpap_1249
PFAM: IS66 Orf2 family protein; KEGG: cth:Cthe_0516 IS66 Orf2 like.
 
     0.780
Cpap_0133
KEGG: dsy:DSY3291 hypothetical protein.
 
     0.664
Cpap_1250
KEGG: cth:Cthe_0517 hypothetical protein.
 
     0.565
Cpap_1838
KEGG: cth:Cthe_0517 hypothetical protein.
 
     0.565
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.