STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0151KEGG: cce:Ccel_2777 hypothetical protein. (271 aa)    
Predicted Functional Partners:
Cpap_0153
KEGG: cce:Ccel_2775 hypothetical protein.
 
     0.956
Cpap_0154
KEGG: cce:Ccel_2774 hypothetical protein.
 
     0.956
Cpap_0148
KEGG: cce:Ccel_2780 hypothetical protein.
 
     0.955
Cpap_0150
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: cce:Ccel_2778 SAF domain protein; SMART: SAF domain protein.
 
   
 0.955
Cpap_0152
PFAM: type II secretion system protein E; KEGG: cce:Ccel_2776 type II secretion system protein E.
 
     0.951
Cpap_0149
PFAM: peptidase A24A prepilin type IV; KEGG: cce:Ccel_2779 peptidase A24A prepilin type IV.
 
     0.948
Cpap_0155
KEGG: hmo:HM1_0591 hypothetical protein.
 
     0.908
Cpap_2387
PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: cce:Ccel_3368 NADH dehydrogenase (ubiquinone) 30 kDa subunit.
     
 0.908
Cpap_0156
KEGG: cce:Ccel_2771 hypothetical protein.
 
     0.905
Cpap_4137
KEGG: cce:Ccel_2303 hydrogenase, Fe-only; TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; iron hydrogenase small subunit; ferredoxin.
    
 0.903
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.