STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0183PFAM: Recombinase; KEGG: cce:Ccel_2730 recombinase. (312 aa)    
Predicted Functional Partners:
Cpap_0184
PFAM: Resolvase domain; Recombinase; KEGG: cce:Ccel_2729 resolvase domain protein.
 
    
0.840
Cpap_0182
KEGG: cce:Ccel_2731 resolvase domain protein; PFAM: Resolvase domain; Recombinase; SMART: Resolvase domain.
 
    
0.804
Cpap_1017
Recombinase; KEGG: cce:Ccel_3111 resolvase domain protein; PFAM: Recombinase; Resolvase domain; SMART: Resolvase domain.
  
     0.764
Cpap_0166
KEGG: cce:Ccel_2752 hypothetical protein.
  
    0.763
Cpap_0001
Hypothetical protein; Manually curated; KEGG: bcg:BCG9842_B3621 hypothetical protein.
  
     0.743
Cpap_1020
PFAM: Resolvase domain; Recombinase; KEGG: cce:Ccel_0430 resolvase domain protein.
 
     0.727
Cpap_0141
PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: cce:Ccel_2787 D12 class N6 adenine-specific DNA methyltransferase.
 
    0.705
Cpap_0167
PFAM: AIG2 family protein; KEGG: dsy:DSY4644 hypothetical protein.
  
     0.703
Cpap_1259
KEGG: cpf:CPF_0971 toxin secretion/phage lysis holin; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis.
 
    0.681
Cpap_1542
KEGG: cpf:CPF_0971 toxin secretion/phage lysis holin; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis.
 
    0.676
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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