STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0187Helix-turn-helix domain protein; KEGG: gka:GK0493 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (110 aa)    
Predicted Functional Partners:
Cpap_0188
PFAM: phosphoadenosine phosphosulfate reductase; KEGG: clj:CLJU_c14570 hypothetical protein.
       0.773
Cpap_0189
TIGRFAM: DNA sulfur modification protein DndD; KEGG: clj:CLJU_c14560 hypothetical protein.
       0.773
Cpap_0190
PFAM: Domain of unknown function DUF1832; KEGG: cbt:CLH_1926 hypothetical protein.
       0.773
Cpap_0191
Cysteine desulfurase; Manually curated; KEGG: clj:CLJU_c14540 cysteine desulfurase; PFAM: aminotransferase class V.
       0.773
Cpap_0877
KEGG: cba:CLB_2940 DNA-binding protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.766
Cpap_3753
Helix-turn-helix domain protein; KEGG: cce:Ccel_2790 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.725
Cpap_1290
Helix-turn-helix domain protein; KEGG: cce:Ccel_2256 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
     0.720
Cpap_0192
KEGG: rde:RD1_0803 hypothetical protein.
       0.714
Cpap_4192
Helix-turn-helix domain protein; KEGG: cce:Ccel_2256 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
     0.710
Cpap_4193
Helix-turn-helix domain protein; KEGG: cce:Ccel_2256 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
     0.697
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.