STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0246PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: cce:Ccel_0725 beta-lactamase class A-like protein. (353 aa)    
Predicted Functional Partners:
Cpap_0117
Peptidoglycan glycosyltransferase; KEGG: cce:Ccel_2876 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
  
 
 0.633
Cpap_0245
KEGG: cce:Ccel_0724 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; UbiC transcription regulator-associated domain-containing protein.
 
     0.621
Cpap_1949
KEGG: cce:Ccel_0277 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein.
  
     0.614
mtaD
Amidohydrolase; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.
  
    0.573
Cpap_2251
KEGG: cce:Ccel_0172 hypothetical protein.
  
     0.572
Cpap_0024
KEGG: cce:Ccel_0509 hypothetical protein.
  
     0.561
Cpap_0634
Hypothetical protein; Manually curated; KEGG: cce:Ccel_2046 hypothetical protein.
  
     0.532
Cpap_2124
KEGG: cce:Ccel_0042 primosome, DnaD subunit.
  
     0.527
Cpap_1930
PFAM: S-layer domain-containing protein; Fibronectin type III domain protein; KEGG: cce:Ccel_0274 S-layer domain protein.
  
     0.506
Cpap_1695
PFAM: Spore coat protein CotH; Carbohydrate-binding CenC domain protein; KEGG: bfr:BF1549 hypothetical protein.
 
 
 0.502
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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