STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0263KEGG: cce:Ccel_0742 hypothetical protein. (366 aa)    
Predicted Functional Partners:
Cpap_2846
PFAM: glycoside hydrolase family 5; Dockerin type 1; KEGG: cce:Ccel_0840 glycoside hydrolase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.564
Cpap_0262
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cce:Ccel_0741 transcriptional regulator, LysR family.
       0.545
Cpap_1531
KEGG: gka:GK0542 hypothetical protein.
  
 0.510
Cpap_0257
PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; Dockerin type 1; KEGG: cce:Ccel_0735 glycoside hydrolase family 9.
  
  0.489
Cpap_0253
PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; Dockerin type 1; KEGG: cce:Ccel_0731 glycoside hydrolase family 9.
  
  0.475
Cpap_0256
PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; Dockerin type 1; KEGG: cce:Ccel_0734 glycoside hydrolase family 9; Belongs to the glycosyl hydrolase 9 (cellulase E) family.
  
 0.470
Cpap_4240
PFAM: glycoside hydrolase family 9; KEGG: cce:Ccel_2226 glycoside hydrolase family 9.
  
 0.470
Cpap_1694
PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; Dockerin type 1; KEGG: cce:Ccel_1648 glycoside hydrolase family 9.
  
  0.467
Cpap_1693
PFAM: glycoside hydrolase family 9; Dockerin type 1; type 3a cellulose-binding domain protein; KEGG: cce:Ccel_1648 glycoside hydrolase family 9.
  
  0.456
Cpap_1230
Transcriptional regulator, AraC family; KEGG: ppp:PHYPADRAFT_103805 hypothetical protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
     0.455
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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