STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0286Radical SAM domain protein; KEGG: tjr:TherJR_2454 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB. (434 aa)    
Predicted Functional Partners:
Cpap_0285
PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dat:HRM2_43030 HgdA.
       0.773
Cpap_2945
Coproporphyrinogen dehydrogenase; PFAM: Radical SAM domain protein; KEGG: cce:Ccel_1948 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB.
  
  
 
0.765
Cpap_0284
PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dat:HRM2_43040 HgdB1.
       0.741
Cpap_0283
PFAM: Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding; KEGG: bay:RBAM_016990 BaeL.
       0.705
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
 
   
 0.672
Cpap_0282
Hypothetical protein; KEGG: bbe:BBR47_39880 putative polyketide synthase.
       0.669
Cpap_0281
Hypothetical protein; KEGG: cce:Ccel_0862 beta-ketoacyl synthase.
     
 0.625
Cpap_0280
Beta-ketoacyl-acyl-carrier-protein synthase I., 6-deoxyerythronolide-B synthase; Manually curated; KEGG: mxa:MXAN_3935 non-ribosomal peptide synthase/polyketide synthase Ta1; PFAM: Beta-ketoacyl synthase; Acyl transferase; phosphopantetheine-binding; KR domain protein.
       0.561
Cpap_3374
KEGG: cce:Ccel_1278 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrinogen III synthase HEM4; Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
  
  
 0.516
Cpap_3819
KEGG: cce:Ccel_1045 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
   
 0.509
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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