STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0287PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: cce:Ccel_3233 isoprenylcysteine carboxyl methyltransferase. (181 aa)    
Predicted Functional Partners:
Cpap_0740
PFAM: methylenetetrahydrofolate reductase; homocysteine S-methyltransferase; KEGG: cce:Ccel_2474 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein.
 
  
  0.749
Cpap_3478
PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: cth:Cthe_0645 methionine synthase (B12-dependent).
    
  0.688
Cpap_0288
KEGG: msi:Msm_1483 multidrug ABC transporter, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
  
    0.563
Cpap_0289
PFAM: ABC-2 type transporter; KEGG: msi:Msm_1484 multidrug ABC transporter, permease component.
       0.563
Cpap_3912
KEGG: cce:Ccel_1144 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA-like domain-containing protein; DsrE family protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein; Belongs to the sulfur carrier protein TusA family.
    
 0.524
Cpap_0285
PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dat:HRM2_43030 HgdA.
       0.467
Cpap_0286
Radical SAM domain protein; KEGG: tjr:TherJR_2454 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.467
Cpap_0284
PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dat:HRM2_43040 HgdB1.
       0.450
Cpap_0948
KEGG: cce:Ccel_2158 putative ABC-2 type transport system permease protein.
  
    0.441
Cpap_0283
PFAM: Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding; KEGG: bay:RBAM_016990 BaeL.
       0.430
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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