STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0314KEGG: cce:Ccel_1307 glycosyl transferase family 2; manually curated; PFAM: glycosyl transferase family 2. (322 aa)    
Predicted Functional Partners:
Cpap_0315
KEGG: cce:Ccel_1308 hypothetical protein.
  
 
 0.840
Cpap_0316
PFAM: acyltransferase 3; KEGG: bai:BAA_5735 hypothetical protein.
  
    0.785
Cpap_2019
PFAM: GtrA family protein; KEGG: cce:Ccel_0350 GtrA family protein.
 
 
 0.608
Cpap_4106
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: cce:Ccel_2331 amino acid adenylation domain protein; SMART: Polyketide synthase/Fatty acid synthase, KR.
  
 0.506
Cpap_2017
PFAM: Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; transferase hexapeptide repeat containing protein; KEGG: cce:Ccel_0348 nucleotidyl transferase.
  
 0.499
Cpap_2961
PFAM: Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; KEGG: cce:Ccel_1940 nucleotidyl transferase.
  
 0.499
Cpap_2481
PFAM: glycosyl transferase group 1; Methyltransferase type 11; KEGG: cbi:CLJ_B2927 methyltransferase type 11.
  
 
 0.450
Cpap_0281
Hypothetical protein; KEGG: cce:Ccel_0862 beta-ketoacyl synthase.
  
 0.445
Cpap_0328
KEGG: cce:Ccel_2936 hypothetical protein.
 
 
 0.441
Cpap_2097
KEGG: cth:Cthe_2397 hypothetical protein.
 
 
 0.421
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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