STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0325KEGG: cce:Ccel_2939 stage V sporulation protein B; TIGRFAM: stage V sporulation protein B; PFAM: polysaccharide biosynthesis protein. (525 aa)    
Predicted Functional Partners:
Cpap_2454
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: cce:Ccel_3319 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma-H factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
  
    0.709
Cpap_4207
PFAM: protein of unknown function DUF965; KEGG: cce:Ccel_2240 hypothetical protein; Belongs to the UPF0297 family.
  
     0.574
Cpap_0417
PFAM: protein of unknown function DUF633; KEGG: cce:Ccel_0543 protein of unknown function DUF633.
  
     0.564
Cpap_0223
Helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.560
Cpap_2401
PFAM: protein of unknown function DUF951; KEGG: cce:Ccel_3354 protein of unknown function DUF951.
  
     0.494
Cpap_2556
KEGG: cce:Ccel_3083 sporulation protein YabP; TIGRFAM: sporulation protein YabP; PFAM: YabP family protein.
 
  
 0.483
Cpap_2551
Stage V sporulation protein T; KEGG: cce:Ccel_3088 transcriptional regulator, AbrB family; TIGRFAM: stage V sporulation protein T; transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain-containing protein.
 
   
 0.467
Cpap_0326
PFAM: heat shock protein Hsp20; KEGG: cce:Ccel_2938 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.
       0.465
Cpap_3029
KEGG: cce:Ccel_1878 sporulation integral membrane protein YlbJ; TIGRFAM: sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein.
  
  
 0.443
Cpap_0324
PFAM: NLP/P60 protein; KEGG: cce:Ccel_2940 NLP/P60 protein.
 
     0.431
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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