STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0329KEGG: cce:Ccel_2935 transcriptional regulator, PadR-like family; TIGRFAM: transcriptional regulator, PadR-family; PFAM: transcriptional regulator PadR family protein. (116 aa)    
Predicted Functional Partners:
Cpap_0330
PFAM: cell cycle protein; KEGG: cce:Ccel_2934 cell cycle protein; Belongs to the SEDS family.
 
    0.852
Cpap_2471
RNA polymerase, sigma-24 subunit, ECF subfamily; Manually curated; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: cbe:Cbei_1302 ECF subfamily RNA polymerase sigma-24 factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
  
    0.511
Cpap_4236
KEGG: dhd:Dhaf_2886 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
  
    0.507
Cpap_3858
KEGG: cce:Ccel_1104 hypothetical protein.
 
     0.501
Cpap_0328
KEGG: cce:Ccel_2936 hypothetical protein.
       0.482
Cpap_0127
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: clj:CLJU_c16190 putative RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.
   
    0.432
Cpap_0665
KEGG: cce:Ccel_2077 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
   
    0.432
Cpap_0897
KEGG: acl:ACL_0392 ECF subfamily RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
   
    0.432
Cpap_1114
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: ere:EUBREC_3107 hypothetical protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
   
    0.432
Cpap_1252
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: ckr:CKR_1934 hypothetical protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
   
    0.432
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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