STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0333KEGG: cce:Ccel_2931 hypothetical protein. (164 aa)    
Predicted Functional Partners:
Cpap_0331
PFAM: O-antigen polymerase; KEGG: cce:Ccel_2933 O-antigen polymerase.
 
     0.932
Cpap_0334
PFAM: glycosyl transferase group 1; KEGG: cce:Ccel_2930 TPR/glycosyl transferase domain-containing protein.
       0.762
Cpap_0341
KEGG: cce:Ccel_2923 hypothetical protein.
 
     0.755
Cpap_2356
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_3397 S-layer domain protein.
  
     0.706
Cpap_0388
KEGG: cce:Ccel_2883 polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB; PFAM: glycosyl transferase group 1.
 
     0.674
Cpap_0332
KEGG: cce:Ccel_2932 hypothetical protein.
       0.661
Cpap_0574
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_2633 S-layer domain protein.
  
     0.653
Cpap_3582
PFAM: S-layer domain-containing protein; KEGG: csc:Csac_2445 S-layer domain-containing protein.
  
     0.580
Cpap_0335
TIGRFAM: nucleotide sugar dehydrogenase; KEGG: cce:Ccel_2929 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.572
Cpap_0867
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_2633 S-layer domain protein.
  
     0.558
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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