STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0359PFAM: major facilitator superfamily MFS_1; KEGG: cpy:Cphy_1651 major facilitator transporter. (415 aa)    
Predicted Functional Partners:
Cpap_1429
PFAM: L-fucose isomerase-like-like; KEGG: cce:Ccel_3469 L-fucose isomerase-like protein.
 
  
 0.740
Cpap_3237
KEGG: gym:GYMC10_3006 hypothetical protein.
 
  
 0.708
Cpap_4067
L-fucose isomerase-like protein; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.527
Cpap_0358
PFAM: transcription activator effector binding; KEGG: cce:Ccel_1100 hypothetical protein.
       0.511
Cpap_0360
Transcriptional regulator, CdaR; PFAM: helix-turn-helix Fis-type; KEGG: cce:Ccel_2908 transcriptional regulator, CdaR.
       0.489
Cpap_3235
KEGG: sus:Acid_6525 hypothetical protein.
  
     0.472
Cpap_4071
KEGG: bmq:BMQ_3647 hypothetical protein.
  
     0.459
Cpap_0357
KEGG: bfr:BF3843 hypothetical protein.
       0.439
Cpap_0760
KEGG: cce:Ccel_2462 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Belongs to the peptidase S26 family.
   
    0.422
Cpap_2837
PFAM: peptidase S51 dipeptidase E; KEGG: cpy:Cphy_0992 hypothetical protein.
  
     0.413
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.