STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0360Transcriptional regulator, CdaR; PFAM: helix-turn-helix Fis-type; KEGG: cce:Ccel_2908 transcriptional regulator, CdaR. (359 aa)    
Predicted Functional Partners:
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
       0.740
Cpap_0362
Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
       0.740
Cpap_4204
PFAM: phosphoryl transfer system HPr; KEGG: cce:Ccel_2245 HPrNtr domain-containing protein.
  
     0.724
Cpap_0363
PFAM: Peptidase M23; KEGG: cce:Ccel_2905 peptidase M23.
       0.655
Cpap_0364
TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: cce:Ccel_2904 carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.
       0.548
Cpap_0359
PFAM: major facilitator superfamily MFS_1; KEGG: cpy:Cphy_1651 major facilitator transporter.
       0.489
Cpap_3588
KEGG: cce:Ccel_1398 DNA gyrase subunit B domain protein; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; TOPRIM domain-containing protein; DNA gyrase subunit B domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein.
  
     0.472
Cpap_0023
KEGG: cce:Ccel_0508 hypothetical protein.
  
  
  0.433
Cpap_0816
PFAM: Domain of unknown function DUF1858; KEGG: cce:Ccel_2420 hypothetical protein.
  
     0.423
Cpap_2445
KEGG: cce:Ccel_3326 hypothetical protein.
  
     0.420
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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