STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0364TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: cce:Ccel_2904 carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family. (411 aa)    
Predicted Functional Partners:
Cpap_0363
PFAM: Peptidase M23; KEGG: cce:Ccel_2905 peptidase M23.
 
 
 
 0.769
Cpap_0365
KEGG: cce:Ccel_2903 small acid-soluble spore protein beta.
       0.610
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
       0.591
Cpap_0362
Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
       0.591
Cpap_1045
TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: cce:Ccel_0450 membrane-associated zinc metalloprotease; SMART: PDZ/DHR/GLGF domain protein.
 
  
 0.576
Cpap_0360
Transcriptional regulator, CdaR; PFAM: helix-turn-helix Fis-type; KEGG: cce:Ccel_2908 transcriptional regulator, CdaR.
       0.548
Cpap_0366
PFAM: Methyltransferase type 12; KEGG: cce:Ccel_2902 methyltransferase type 12.
       0.462
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
    
 
 0.454
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
 
  0.448
Cpap_2399
PFAM: peptidase C26; KEGG: cce:Ccel_3356 peptidase C26.
   
    0.426
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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