STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0382KEGG: cce:Ccel_2890 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin. (262 aa)    
Predicted Functional Partners:
Cpap_3498
KEGG: cce:Ccel_1350 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; copper amine oxidase-like domain-containing protein; SMART: cell wall hydrolase/autolysin.
  
  
 
0.813
Cpap_2474
KEGG: cce:Ccel_3223 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
  
  
 
0.797
Cpap_3058
PFAM: Rhomboid family protein; KEGG: cce:Ccel_1860 rhomboid family protein.
  
   0.787
Cpap_0323
KEGG: cce:Ccel_2941 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
  
  
 
0.749
Cpap_1882
KEGG: cce:Ccel_0227 hypothetical protein.
    
   0.580
Cpap_0319
Hypothetical protein; KEGG: cce:Ccel_2943 toxin secretion/phage lysis holin.
  
    0.534
Cpap_1259
KEGG: cpf:CPF_0971 toxin secretion/phage lysis holin; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis.
  
    0.534
Cpap_1542
KEGG: cpf:CPF_0971 toxin secretion/phage lysis holin; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis.
  
    0.534
Cpap_0380
KEGG: cce:Ccel_2892 hypothetical protein.
       0.493
Cpap_0381
KEGG: cce:Ccel_2891 hypothetical protein.
       0.482
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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