STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0408KEGG: cce:Ccel_0534 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB. (447 aa)    
Predicted Functional Partners:
Cpap_0407
KEGG: cce:Ccel_0533 hypothetical protein.
 
 
 
 0.989
Cpap_0409
KEGG: cce:Ccel_0535 transferase hexapeptide repeat containing protein.
       0.761
Cpap_2123
PFAM: IstB domain protein ATP-binding protein; KEGG: cce:Ccel_0041 DNA replication protein DnaC.
  
     0.523
Cpap_3028
KEGG: cce:Ccel_1879 H+-ATPase subunit H.
  
     0.502
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
     
 0.501
secF
Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
     
 0.447
Cpap_0417
PFAM: protein of unknown function DUF633; KEGG: cce:Ccel_0543 protein of unknown function DUF633.
 
     0.436
Cpap_1573
PFAM: Aluminium resistance family protein; KEGG: cce:Ccel_0594 aluminium resistance family protein.
  
     0.428
Cpap_2442
DNA-(apurinic or apyrimidinic site) lyase; PFAM: 8-oxoguanine DNA glycosylase domain-containing protein; HhH-GPD family protein; helix-hairpin-helix motif; KEGG: cce:Ccel_3329 8-oxoguanine DNA glycosylase domain protein; SMART: HhH-GPD family protein; Helix-hairpin-helix DNA-binding class 1.
  
     0.423
Cpap_2234
PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: cce:Ccel_0155 Orn/Lys/Arg decarboxylase major region.
 
     0.411
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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