STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0449KEGG: tmt:Tmath_0092 PKD domain containing protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein. (1800 aa)    
Predicted Functional Partners:
Cpap_2177
KEGG: cce:Ccel_0108 kelch repeat protein; PFAM: Kelch repeat type 1-containing protein; SMART: Kelch repeat type 1-containing protein.
    
  0.751
Cpap_2063
PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; KEGG: cce:Ccel_0394 inosine 5-monophosphate dehydrogenase; SMART: CBS domain containing protein.
    
  0.649
Cpap_0945
PFAM: lipolytic protein G-D-S-L family; KEGG: cce:Ccel_2162 lipolytic protein G-D-S-L family.
   
 
 0.645
Cpap_3849
PFAM: glycoside hydrolase family 5; Dockerin type 1; KEGG: cce:Ccel_1099 glycoside hydrolase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 
 0.645
Cpap_2846
PFAM: glycoside hydrolase family 5; Dockerin type 1; KEGG: cce:Ccel_0840 glycoside hydrolase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 
 0.549
Cpap_2357
Hypothetical protein; KEGG: cce:Ccel_3396 outer membrane protein-like protein.
    
 
 0.541
Cpap_2358
PFAM: outer membrane efflux protein; KEGG: cce:Ccel_3395 hypothetical protein.
    
 
 0.541
Cpap_0448
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cpo:COPRO5265_0075 anion ABC transporter, anion-binding protein.
 
     0.528
Cpap_0525
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0891 binding-protein-dependent transport systems inner membrane component.
   
    0.408
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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