STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0488PFAM: amidohydrolase 2; KEGG: cce:Ccel_0547 amidohydrolase 2. (285 aa)    
Predicted Functional Partners:
Cpap_4106
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: cce:Ccel_2331 amino acid adenylation domain protein; SMART: Polyketide synthase/Fatty acid synthase, KR.
  
  
 0.709
Cpap_0010
Manually curated; KEGG: cpi:Cpin_5290 erythronolide synthase, 6-methylsalicylic acid synthase; PFAM: Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding.
  
 
 0.626
Cpap_1804
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bpu:BPUM_0635 acyl-CoA dehydrogenase (NADP(+)).
  
 
 0.594
hemA
Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
    
  0.549
Cpap_0003
6-deoxyerythronolide-B synthase; Manually curated; KEGG: bbe:BBR47_39870 putative mixed polyketide synthase/non-ribosomal peptide synthetase; PFAM: Beta-ketoacyl synthase; phosphopantetheine-binding.
  
 
 0.530
Cpap_3704
PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KEGG: cce:Ccel_0864 amino acid adenylation domain protein.
  
 
 0.530
Cpap_3716
KEGG: cce:Ccel_0862 beta-ketoacyl synthase; PFAM: KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding.
  
 
 0.530
Cpap_0487
KEGG: cce:Ccel_0546 4Fe-4S ferredoxin iron-sulfur binding domain protein.
       0.509
Cpap_0489
KEGG: cce:Ccel_0548 hypothetical protein.
       0.480
Cpap_0907
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: cce:Ccel_2189 alcohol dehydrogenase GroES domain protein.
  
 
  0.453
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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